Fusion event
HIV-GNA15 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
3140823/3140825 (Hg38)
Nearest miRNA
hsa-mir-1227/Upstream/510032; hsa-let-7e/Downstream/820589;
Upstream sequence
agatgctcaagaaatGCtgaatgaatgaatgaatgaatgaatgaatCATTTTTGGGGAGAACTTCCCCCAGACACTGTATCATATCTTCCTGGAGCTGGG
Downstream sequence
AAAGTCCCTTCCACATACCACTCTGGGCACTACTCAGCCAGCCTCAAAGCAGGAAGCCCCTTCTACTGATGGAGGGCAGGGGATGACATCCATGTCCCCA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.