Basic Information
VIS ID
TVIS30004703
Fusion event
HIV-LOC100996351 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3149561/3149563 (Hg38)
End
3149561/3149563 (Hg38)
Orient
-
Location type
ncRNA_exonic
Fragile sites / regions
FRA19B
Target gene
LOC100996351
Nearest miRNA
hsa-mir-1227/Upstream/518770; hsa-let-7e/Downstream/811851;
Nearest TSS
ENST00000633603/Upstream/13121; ENST00000586082/Downstream/277;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/26845, chr19-CpG: 27/Downstream/13280
Upstream sequence
ccacaaatgcagccaaggatacatgcgcgtgccccacacacaaatatgcaaacaaatcacacacccagacacacccatgtacatgtgtacatctatacac
Downstream sequence
acacacacacGAGCACGCTTGTACATGAACAAACACAGAGAAATGCACACACAACACTCAGAGTCCATCACAAAGGTCTGAGCAACGCGAGTGCCTGGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate