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TVIS30004708
Basic Information
VIS ID
TVIS30004708
Fusion event
HIV-TNFAIP8L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
4646281/4646269 (Hg38)
End
4646281/4646269 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
TNFAIP8L1
miRNAs that regulate target gene
hsa-mir-484
;
hsa-mir-921
;
hsa-mir-6073
;
hsa-mir-1287-5p
;
hsa-mir-3135b
;
hsa-mir-6778-3p
;
hsa-mir-6128
;
hsa-mir-150-5p
;
hsa-mir-186-3p
;
hsa-mir-520h
;
hsa-mir-520g-3p
;
hsa-mir-512-3p
;
hsa-mir-3174
;
hsa-mir-520e
;
hsa-mir-520d-3p
;
hsa-mir-520c-3p
;
hsa-mir-520b
;
hsa-mir-520a-3p
;
hsa-mir-373-3p
;
hsa-mir-372-3p
;
hsa-mir-302e
;
hsa-mir-302d-3p
;
hsa-mir-302c-3p
;
hsa-mir-302b-3p
;
hsa-mir-302a-3p
;
hsa-mir-93-5p
;
hsa-mir-526b-3p
;
hsa-mir-519d-3p
;
hsa-mir-20b-5p
;
hsa-mir-20a-5p
;
hsa-mir-17-5p
;
hsa-mir-106b-5p
;
hsa-mir-106a-5p
;
hsa-mir-4465
;
hsa-mir-26b-5p
;
hsa-mir-26a-5p
;
hsa-mir-1297
;
hsa-mir-4772-3p
;
hsa-mir-1304-3p
;
hsa-mir-660-3p
;
hsa-mir-5193
;
hsa-mir-7113-3p
;
hsa-mir-1281
;
hsa-mir-4485-5p
;
hsa-mir-6752-3p
;
hsa-mir-6890-3p
;
hsa-mir-6720-3p
;
hsa-mir-668-5p
;
hsa-mir-1539
;
hsa-mir-4284
;
hsa-mir-4638-5p
;
hsa-mir-1307-3p
;
hsa-mir-6741-3p
;
hsa-mir-7856-5p
;
hsa-mir-6807-5p
;
hsa-mir-6799-3p
;
hsa-mir-3173-5p
;
hsa-mir-4313
;
hsa-mir-3189-5p
;
hsa-mir-4758-3p
;
hsa-mir-324-3p
;
hsa-mir-1913
;
hsa-mir-1292-3p
;
hsa-mir-6832-3p
;
hsa-mir-6504-3p
;
hsa-mir-4454
;
hsa-mir-4707-3p
;
hsa-mir-372-5p
;
hsa-mir-371a-5p
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-3973
;
hsa-mir-6877-3p
;
hsa-mir-6819-3p
;
hsa-mir-5089-5p
;
hsa-mir-5589-5p
;
hsa-mir-4731-5p
;
hsa-mir-6506-5p
;
hsa-mir-619-5p
;
hsa-mir-4715-3p
;
hsa-mir-7151-3p
;
hsa-mir-5095
;
hsa-mir-1227-3p
;
hsa-mir-365b-5p
;
hsa-mir-365a-5p
;
hsa-mir-8052
;
hsa-mir-3199
;
hsa-mir-4740-3p
;
hsa-mir-455-5p
;
hsa-mir-4438
;
hsa-mir-1976
;
hsa-mir-3653-5p
;
hsa-mir-4279
;
hsa-mir-4722-3p
;
hsa-mir-498
;
hsa-mir-562
;
hsa-mir-5697
;
hsa-mir-6727-3p
;
hsa-mir-6747-3p
;
hsa-mir-6814-5p
Nearest miRNA
hsa-mir-1227/Upstream/200221; hsa-let-7e/Downstream/124401;
Nearest TSS
ENST00000633603/Upstream/6252;
ENST00000381796/Downstream/9255;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/6531
,
chr19-CpG: 46/Downstream/5822
Upstream sequence
tggagtgcagtggaacaatctcgactccctgcaacctccgcctcccaggttcaagcggttctcctgcctcagtctcccgagtagctggaattacaggtgc
Downstream sequence
tcgccaccacgcccggccgactttttttttttttttcagttgagtccgggtctcactatgttggccaggctagtcttgaactcctggcctcaattgatcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Bcl-2 transduced CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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