Basic Information
VIS ID
TVIS30004716
Fusion event
HIV-PPAN integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10219203/10108527 (Hg38)
End
10219203/10108527 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
PPAN
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-98-5p ; hsa-mir-16-5p ; hsa-mir-423-3p ; hsa-mir-93-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-3176
Nearest miRNA
hsa-mir-1227/Upstream/70114; hsa-let-7e/Downstream/121886;
Nearest TSS
ENST00000633603/Upstream/537; ENST00000468881/Downstream/1435;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1863, chr19-CpG: 37/Downstream/1409
Upstream sequence
ATCTCTTCTTAGGGccctgttttacagagggaagctgcgggcccagtgctatggcttcggcctgtaatcccagtactttgggagggcgaggtgggaggat
Downstream sequence
cgcttgaagccaagactttgagatcagcctgtgcaacatagcgagaccccatgtctacaaaaagtagatttttaaaaagcccggtgtggcggtgcatgcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate