Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene17392098172921311731023617292609173068431730951817323301173232231733482917334920173427351730791217313543173020251730698817326150173308241732154917325425173360921733861917333041173354811729568617297644172918461729354117340044173416731731677017318279172936011729478117338772173391861733269217332901173392521733942117341972
Basic Information
VIS ID
TVIS30004731
Fusion event
HIV-GTPBP3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
17452781/17341972 (Hg38)
End
17452781/17341972 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA19B
Target gene
GTPBP3
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-3622a-3p ; hsa-mir-3622b-3p ; hsa-mir-4682 ; hsa-mir-2681-5p ; hsa-mir-4777-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-6765-3p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-181a-2-3p ; hsa-mir-377-5p ; hsa-mir-455-3p ; hsa-mir-6086 ; hsa-mir-6516-5p
Nearest miRNA
hsa-mir-10395/Upstream/1892364; hsa-let-7e/Downstream/940105;
Nearest TSS
ENST00000633603/Upstream/1026; ENST00000597592/Downstream/18960;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3738, chr19-CpG: 41/Downstream/9940
Upstream sequence
AGATTCAGGCCCTGGAATGGGGCTGAATGGAGGTCCCGTTCGACCCTTGATGCTGGGGCATCCGGGTTGGGATGGAGATAGGAGGATCTCAGTATATTTG
Downstream sequence
TTTCGTAGTTTTTTATTTATTTTGCAAATACCAAAGGAATGTAAAAAAAACTCAGGTGATCTAGAAGTGTTTATTTTcttcccttcccttcccttccctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate