Basic Information
VIS ID
TVIS30004734
Fusion event
HIV-IL12RB1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
18199986/18089176 (Hg38)
End
18199986/18089176 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
IL12RB1
Nearest miRNA
hsa-mir-10395/Upstream/2639568; hsa-let-7e/Downstream/192901;
Nearest TSS
ENST00000633603/Upstream/2173; ENST00000601226/Downstream/8617;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/36970, chr19-CpG: 36/Downstream/8435
Upstream sequence
gggtggacgaagatggacaggaaaggcacacactgtatgattccacttatataaaatatccaaaataggcaaatgtacagaggcagacagtagctgagtg
Downstream sequence
gttgtcaggggctggggggaggcgggagtgagaagtgactgctgatgtatgcggggtttccttttggggtgatgcaaatgttctggaaccagatagaggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate