VISDB Viral Integration Site DataBase

VIS ID

TVIS30004740

Fusion event

HIV-NFKBID integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

36387377/35896475 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6844 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-6895-3p ; hsa-mir-4524a-3p ; hsa-mir-6817-3p ; hsa-mir-130b-5p ; hsa-mir-7110-3p ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-6131 ; hsa-mir-4707-3p ; hsa-mir-4755-3p ; hsa-mir-4454 ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1306-5p ; hsa-mir-6513-3p ; hsa-mir-4781-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-483-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6738-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-3182 ; hsa-mir-6742-3p ; hsa-mir-4705 ; hsa-mir-129-5p

Nearest miRNA

hsa-mir-10395/Upstream/550848; hsa-let-7e/Downstream/3513148;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/21553, chr19-CpG: 32/Downstream/2168

Upstream sequence

TGCCAGCTGGCCATACCAAGAGAACTCCTGGGAGCCCGTAGGTAGCGGCCACGTGCAAGACCGAACGTCCCTGATGGTCAGCGGCATTGGGCTCTGCTCC

Downstream sequence

CAGGTTCAACAGATCCTCCACAATCAGGGGCTGGTTGGCAGCAGCCGCCACCAGGAGAGGGGTCTGCAGGCCACAGGAGAAGTCAGGTTGGGCTCCTGGT