VISDB Viral Integration Site DataBase

VIS ID

TVIS30004741

Fusion event

HIV-ZNF529 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

37040162/36549260 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-196a-5p ; hsa-mir-190a-3p ; hsa-mir-7114-5p ; hsa-mir-147a ; hsa-mir-6867-5p ; hsa-mir-590-3p ; hsa-mir-5011-5p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-513b-5p ; hsa-mir-7847-3p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-144-5p ; hsa-mir-134-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-3664-5p ; hsa-mir-618 ; hsa-mir-3123 ; hsa-mir-3658 ; hsa-mir-1277-5p ; hsa-mir-3152-3p ; hsa-mir-648 ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-584-5p ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-3165 ; hsa-mir-4322 ; hsa-mir-4296 ; hsa-mir-4265 ; hsa-mir-4666b ; hsa-mir-3924 ; hsa-mir-4671-3p ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-4417 ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-7852-3p ; hsa-mir-3668 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-223-5p

Nearest miRNA

hsa-mir-10395/Upstream/1203633; hsa-let-7e/Downstream/2860363;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/20351, chr19-CpG: 69/Downstream/23730

Upstream sequence

ACCCTCAGAAAGGGCATATTAGTTGACCCTAAATAACTTCATTTCTGTTTCTAATCCCATATCTAGTGCCTTACCCTCATATATATTTTTTTCAGTTGTG

Downstream sequence

TATTCAATACTTTTCTCTTACACCATTTACTTCCTTATTCCTTAAATTCCACAAGGACAAATGTAATAAATTTTCATGTGCCAATGTATAACAAGACCTA