Basic Information
VIS ID
TVIS30004752
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
46415291/45912033 (Hg38)
End
46415291/45912033 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/237009; hsa-let-7e/Downstream/106899;
Nearest TSS
ENST00000633603/Upstream/9429; ENST00000594672/Downstream/2837;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/8746, chr19-CpG: 21/Downstream/2237
Nearby gene
NANOS2(No orient, 1182)
Upstream sequence
CAGGGCCAGAGAAACCCATAGACATGACATGAAAAGGGAATGGGGATCAAGGCAAAGGCACAGGAGGAATTTGAGAGCCAGTTCATAGGTGGCGGATGTA
Downstream sequence
TCAGGGGCCGGCTGGGAGGGGAACCCAAAGCCCCTTCCTGTCCTGCCTCCGTGTTCCCCGTGTTGGATCTGGCCAATGCAGCTACCTGCTCCTTCACGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate