VISDB Viral Integration Site DataBase

VIS ID

TVIS30004753

Fusion event

HIV-SLC1A5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.32

Reference genome

Start

End

47278579/46775322 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-125a-5p ; hsa-mir-34a-5p ; hsa-mir-16-5p ; hsa-mir-1226-3p ; hsa-mir-324-3p ; hsa-mir-331-3p ; hsa-mir-15b-5p ; hsa-mir-5698 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-619-5p ; hsa-mir-3135b ; hsa-mir-218-5p ; hsa-mir-6746-3p ; hsa-mir-6856-3p ; hsa-mir-4762-3p ; hsa-mir-3192-3p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-5704 ; hsa-mir-29a-5p ; hsa-mir-3920 ; hsa-mir-1224-3p ; hsa-mir-1295b-3p ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4252 ; hsa-mir-4742-3p ; hsa-mir-3130-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-500b-3p ; hsa-mir-4438 ; hsa-mir-4639-5p ; hsa-mir-6780a-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-590-3p ; hsa-mir-137 ; hsa-mir-589-3p ; hsa-mir-6767-3p ; hsa-mir-8485 ; hsa-mir-8064 ; hsa-mir-6729-3p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-4436b-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-891a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-5693 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-3622b-5p ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-2681-3p ; hsa-mir-3664-5p ; hsa-mir-4313 ; hsa-mir-6742-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-8057 ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-143-5p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-6778-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-6504-3p ; hsa-mir-3159 ; hsa-mir-562 ; hsa-mir-150-5p ; hsa-mir-433-3p ; hsa-mir-4454 ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6821-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3926 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-330-3p ; hsa-mir-4690-5p ; hsa-mir-552-3p ; hsa-mir-1227-3p ; hsa-mir-3199 ; hsa-mir-365a-5p ; hsa-mir-365b-5p ; hsa-mir-455-5p ; hsa-mir-4715-3p ; hsa-mir-8052

Nearest miRNA

hsa-mir-10395/Upstream/65968; hsa-let-7e/Downstream/451620;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/18355, chr19-CpG: 105/Downstream/12006

Upstream sequence

GGTCACGGTGGGGACGCAGCAGAACATTATTTCTCCATCTTGCTGTTTTCTAGCCTTGAGTTGGGGACATGAGTGAGAACTGGGGGTTTTGAGGAGTAAC

Downstream sequence

CCTTGTGAACACATGTACTCCAGCAGCCAGGCATCCCAGATCTCCTGTCCTGGAGGGTGCTGGGGCCCCTGGCTCCCCAGAGTGTGCAGGCAGACCCCCA