VISDB Viral Integration Site DataBase

VIS ID

TVIS30004762

Fusion event

HIV-ZNF28 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.41

Reference genome

Start

End

53319188/52815935 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-4272 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-6771-5p ; hsa-mir-1262 ; hsa-mir-425-3p ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-4451 ; hsa-mir-6799-5p ; hsa-mir-6134 ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-15b-3p ; hsa-mir-6746-5p ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-4776-3p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-4755-3p ; hsa-mir-3613-3p ; hsa-mir-4307 ; hsa-mir-6074 ; hsa-mir-5583-3p ; hsa-mir-4517 ; hsa-mir-3655 ; hsa-mir-548c-3p ; hsa-mir-147a ; hsa-mir-3911 ; hsa-mir-644a ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-5093 ; hsa-mir-490-5p ; hsa-mir-3688-3p ; hsa-mir-2681-3p

Nearest miRNA

hsa-let-7e/Upstream/534042; hsa-mir-10394/Downstream/850744;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/28976, chr19-CpG: 20/Downstream/41013

Upstream sequence

ataactatcgtgtactggccttgacaacggtgtgatgaaataattggtacaacaaactccaatgacgtgagtttgcctctgtaacaaaccttcacatgta

Downstream sequence

gccccaaacgtaaagtaaaaaaaaaTACATAAAAATTTTTCTTTAATTTACAACAGAATTTTTTTTAAAGTCTCATAATGATGCAGAAATACACGTGTAC