VISDB Viral Integration Site DataBase

VIS ID

TVIS30004766

Fusion event

HIV-TRIM28 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.43

Reference genome

Start

End

59060954/58549587 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-877-3p ; hsa-mir-744-5p ; hsa-mir-505-5p ; hsa-mir-423-5p ; hsa-mir-93-3p ; hsa-mir-505-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-149-5p ; hsa-mir-221-3p ; hsa-mir-183-5p ; hsa-mir-92a-3p ; hsa-mir-30a-5p ; hsa-mir-15a-5p ; hsa-let-7b-5p ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-6857-5p ; hsa-mir-491-5p ; hsa-mir-542-3p ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-4450 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-6890-5p ; hsa-mir-4733-3p ; hsa-mir-6753-5p ; hsa-mir-1296-3p ; hsa-mir-4700-3p ; hsa-mir-1233-5p ; hsa-mir-1587 ; hsa-mir-1972 ; hsa-mir-3190-5p ; hsa-mir-3620-5p ; hsa-mir-378g ; hsa-mir-3919 ; hsa-mir-3925-5p ; hsa-mir-4270 ; hsa-mir-4436a ; hsa-mir-4441 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4650-5p ; hsa-mir-4656 ; hsa-mir-4675 ; hsa-mir-4717-5p ; hsa-mir-4741 ; hsa-mir-4755-3p ; hsa-mir-4773 ; hsa-mir-5000-3p ; hsa-mir-5001-5p ; hsa-mir-5702 ; hsa-mir-5787 ; hsa-mir-6754-5p ; hsa-mir-6777-5p ; hsa-mir-6778-5p ; hsa-mir-6829-5p ; hsa-mir-7113-5p ; hsa-mir-762

Nearest miRNA

hsa-let-7e/Upstream/156141; hsa-mir-6807/Downstream/698;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/4472, chr19-CpG: 58/Downstream/5197

Nearest cancer related gene

TRIM28(OG, No orient, 0)

Upstream sequence

CTCCTGAGGGTACCTCAGCCCCAGGTGGTGGCCCGGGAACCCTGGATGACAGTGCCACCATTTGCCGTGTCTGCCAGAAGCCAGGCGATCTGGTTATGTG

Downstream sequence

CAACCAGTGTGAGTTTTGTTTCCACCTGGACTGTCACCTGCCGGCCCTGCAGGATGTACCAGGGTGAGTGTGAGGCTGGTGGGGGTCAAGTCTGGGTGTT