VISDB Viral Integration Site DataBase

VIS ID

TVIS30004767

Fusion event

HIV-NOL10 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p25.1

Reference genome

Start

End

10790568/10650442 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-124-3p ; hsa-mir-935 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3202 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-7515 ; hsa-mir-6783-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4428 ; hsa-mir-550b-2-5p ; hsa-mir-1227-3p ; hsa-mir-4480 ; hsa-mir-4279 ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-4264 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-622 ; hsa-mir-122-3p ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-1224-3p ; hsa-mir-122-5p ; hsa-mir-1304-3p ; hsa-mir-1307-3p ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-222-5p ; hsa-mir-3129-5p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-3664-5p ; hsa-mir-4430 ; hsa-mir-4638-5p ; hsa-mir-4639-3p ; hsa-mir-4746-3p ; hsa-mir-4797-3p ; hsa-mir-504-3p ; hsa-mir-6722-5p ; hsa-mir-6794-3p ; hsa-mir-936

Nearest miRNA

hsa-mir-4261/Upstream/457771; hsa-mir-10b/Downstream/890163;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/123803, chr2-CpG: 46/Downstream/39156

Upstream sequence

ttagtagagacagagtcttgctgtgttgacaaggctggtcttgaactcctggcctcaagtgatcctcctgcctcaggattataggcatgatgggattaca

Downstream sequence

ggcgtgagccactgcactaggccACAACAATCTTCATTAAATAAGTGTTTTGGGCGTTTTTCCCAGAGAGAAACACTTTTAAATTTCATTTAAAAGCATG