VISDB Viral Integration Site DataBase

VIS ID

TVIS30004772

Fusion event

HIV-LCLAT1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p23.1

Reference genome

Start

End

30697822/30474956 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-181a-5p ; hsa-mir-30a-5p ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-4262 ; hsa-mir-3919 ; hsa-mir-3942-5p ; hsa-mir-4703-5p ; hsa-mir-4756-3p ; hsa-mir-4766-3p ; hsa-mir-892c-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-340-5p ; hsa-mir-568 ; hsa-mir-4495 ; hsa-mir-5680 ; hsa-mir-6835-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-1468-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aj-5p ; hsa-mir-548aw ; hsa-mir-188-3p ; hsa-mir-21-3p ; hsa-mir-3591-3p ; hsa-mir-6833-5p ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-3911 ; hsa-mir-3190-3p ; hsa-mir-654-5p ; hsa-mir-6721-5p ; hsa-mir-541-3p ; hsa-mir-6878-5p ; hsa-mir-4736 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-3665 ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-7515 ; hsa-mir-4649-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-3934-5p ; hsa-mir-6760-5p ; hsa-mir-3908 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-302b-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-520d-3p ; hsa-mir-372-3p ; hsa-mir-520e ; hsa-mir-302e ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302a-3p ; hsa-mir-3149 ; hsa-mir-203a-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-302c-5p ; hsa-mir-4446-5p

Nearest miRNA

hsa-mir-1301/Upstream/2478507; hsa-mir-10b/Downstream/2057197;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/27102, chr2-CpG: 146/Downstream/662499

Upstream sequence

gcctaggctggtctggaactcctaggctcaagcaattctcccaccttggtctctcaaagtgctgggattacaggcatgagccaccacacctggccTTAAA

Downstream sequence

TTTGTTAGTTATACACAGATCCAGGTTCAGATTTACCTTGCTAGTCTTATTCTGTGTGTGtgagacagggtctaactgttgcccaggctggagtacagtg