VISDB Viral Integration Site DataBase

VIS ID

TVIS30004773

Fusion event

HIV-YIPF4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr2

Cytoband

p22.3

Reference genome

Start

End

32526139/32301070 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-125a-5p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-6849-3p ; hsa-mir-7977 ; hsa-mir-653-5p ; hsa-mir-8068 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-33a-3p ; hsa-mir-450a-2-3p ; hsa-mir-6857-5p ; hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6810-5p ; hsa-mir-2110 ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-6878-5p ; hsa-mir-5572 ; hsa-mir-4736 ; hsa-mir-4635 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1292-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5698 ; hsa-mir-487b-5p ; hsa-mir-487a-5p ; hsa-mir-188-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4269 ; hsa-mir-6715b-5p ; hsa-mir-140-5p ; hsa-mir-3622a-5p ; hsa-mir-4260 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-4252 ; hsa-mir-3128 ; hsa-mir-4793-3p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-1273g-3p ; hsa-mir-500a-3p ; hsa-mir-767-5p ; hsa-mir-5186 ; hsa-mir-4524a-3p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-7641 ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-483-5p ; hsa-mir-7153-3p ; hsa-mir-3674 ; hsa-mir-4775 ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4781-3p ; hsa-mir-7151-3p ; hsa-mir-6872-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-3663-5p ; hsa-mir-345-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4316 ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-3178 ; hsa-mir-566 ; hsa-mir-6720-3p ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-20b-3p ; hsa-mir-5690 ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-4636 ; hsa-mir-4716-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-2276-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6794-3p ; hsa-mir-6879-3p ; hsa-mir-4294 ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-1304-3p ; hsa-mir-645 ; hsa-mir-4639-3p ; hsa-mir-3664-5p ; hsa-mir-1295b-5p ; hsa-mir-1912 ; hsa-mir-3130-5p ; hsa-mir-3194-3p ; hsa-mir-431-5p ; hsa-mir-4482-5p ; hsa-mir-5007-5p ; hsa-mir-5591-3p ; hsa-mir-5691 ; hsa-mir-6805-3p ; hsa-mir-924

Nearest miRNA

hsa-mir-1301/Upstream/4304621; hsa-mir-10b/Downstream/231083;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/22668, chr2-CpG: 135/Downstream/55608

Upstream sequence

CCTTCTGGTCGGCATTGGTAACATCTAGGTTCTCTAGACCTTGGATTTTTCATCTGAATGGGATGGTTGTAGTCCCTTTAAATAATTCTACAATTTAGGG

Downstream sequence

GAAGTAGTGACAAAATGTAATGTAGAGATATACTGAAGGTagtatgaaactcaagagagaggtaaatgctggaaatatagatttgggtattatcagcaaa