Basic Information
VIS ID
TVIS30004774
Fusion event
HIV-CEBPZ integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
37442532/37215389 (Hg38)
End
37442532/37215389 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEBPZ
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-1301/Upstream/1743903; hsa-mir-10b/Downstream/10162286;
Nearest TSS
ENST00000437798/Upstream/1922; ENST00000416653/Downstream/15980;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/18691, chr2-CpG: 72/Downstream/15866
Upstream sequence
TAAATAATCACTTTAAACTTGTCATTTTCAGCTCAAAAAATGACAAGCTTGCCATTAatgcgtgccattctgggaataaacaggaagttaacagagtttt
Downstream sequence
cctttatactgaggaAAACTAAGAAATAAGGAACTACAAGAAATCAGTTTTACCTCTTCAGAATAAAAATTGCTGACTCATCCTGAGTAAAaggagattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate