Basic Information
VIS ID
TVIS30004781
Fusion event
HIV-COMMD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p15
Reference genome
GRCh37/hg19
Start
62250811/62023676 (Hg38)
End
62250811/62023676 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
COMMD1
miRNAs that regulate target gene
hsa-mir-205-3p
Nearest miRNA
hsa-mir-1301/Upstream/1636231; hsa-mir-10b/Downstream/182150;
Nearest TSS
ENST00000437798/Upstream/22697; ENST00000444166/Downstream/112169;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/134821, chr2-CpG: 157/Downstream/171380
Upstream sequence
gggttcaagcgattctcctgcctcagcatcctgagtagctgggagtacaggtgcacgccaccacgcttggctaattttttgtatttttagtagagacggg
Downstream sequence
gtttcaccatgttggccaggctggtatcaaactcttgaccttgggtgttccgcccgccttggcctcccaaagtgctgggattacaggcatgagccacggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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