Basic Information
VIS ID
TVIS30004784
Fusion event
HIV-TRABD2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
85102195/84875071 (Hg38)
End
85102195/84875071 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2L
Target gene
TRABD2A
miRNAs that regulate target gene
hsa-mir-6809-3p ; hsa-mir-4768-5p ; hsa-mir-6833-3p ; hsa-mir-4753-3p ; hsa-mir-1298-5p ; hsa-mir-130b-5p ; hsa-mir-6739-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-2117 ; hsa-mir-3124-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5571-5p ; hsa-mir-659-3p ; hsa-mir-3180-5p ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-5002-5p ; hsa-mir-10a-3p ; hsa-mir-1270 ; hsa-mir-129-5p ; hsa-mir-2909 ; hsa-mir-296-3p ; hsa-mir-4531 ; hsa-mir-4683 ; hsa-mir-590-3p ; hsa-mir-620 ; hsa-mir-7850-5p
Nearest miRNA
hsa-mir-1285-2/Upstream/5008488; hsa-mir-10b/Downstream/908529;
Nearest TSS
ENST00000437798/Upstream/25515; ENST00000233143/Downstream/6079;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/358510, chr2-CpG: 77/Downstream/5536
Upstream sequence
GAACTTTCTGGAACCATTAAAGAGATCCTGGGGACTTCCCAGTCTGTGGGCTGAATCTTGATGGCTGCCACACTCATGACATCAACAATGGTGCAGTGGA
Downstream sequence
ATGCCCAGCTAGTTAAGAAGCACAAAGGAAAACATTTCAATAAGGGATCATTTGACAGCAAAAACCACAAAAAGAACATGTAAGCCAGaaaagggacagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate