Basic Information
VIS ID
TVIS30004791
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
154521011/153664498 (Hg38)
End
154521011/153664498 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-128-1/Upstream/2296087; hsa-mir-10b/Downstream/5522337;
Nearest TSS
ENST00000437798/Upstream/185690; ENST00000434213/Downstream/207415;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/185554, chr2-CpG: 49/Downstream/206895
Nearby gene
RPRM(No orient, 185689)
Nearest cancer related gene
RPRM(TSG, No orient, 185689)
Upstream sequence
ctcccttgttccctgaaaatcgctgttatcctgttcttttttaggatgcccagatttcatattgttcaaacacacaggttttacaaacaatttgtgcagt
Downstream sequence
taacgcaatcatcacaaggtcctggggcaacatacatcctcagcttatgaagatgatgggattaagagattaaagtaaagacaggtgtaggaaattataa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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