Basic Information
VIS ID
TVIS30004792
Fusion event
HIV-GPD2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
157325235/156468723 (Hg38)
End
157325235/156468723 (Hg38)
Orient
+
Location type
Intronic
Target gene
GPD2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-877-3p ; hsa-mir-206
Nearest miRNA
hsa-mir-128-1/Upstream/5100312; hsa-mir-10b/Downstream/2718112;
Nearest TSS
ENST00000437798/Upstream/32238; ENST00000416888/Downstream/4849;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/32226, chr2-CpG: 31/Downstream/1128564
Upstream sequence
TTGTACATCTGGATTTCTCAGTGTAGGTGATTGGAAGAGCATGGATCGCTTTTATTTATTTTTAATTTCTTTTTTCtttttaatttttctgggtacatag
Downstream sequence
tatgtatacatatttttgggtacatgagataatttgctacaggcatgcaatgagtaacagtaatatcagggtaaatgggtatccattaccttaagcattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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