Basic Information
VIS ID
TVIS30004797
Fusion event
HIV-GLS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
191749024/190884298 (Hg38)
End
191749024/190884298 (Hg38)
Orient
+
Location type
Intronic
Target gene
GLS
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-23a-3p
Nearest miRNA
hsa-mir-10b/Upstream/1751187; hsa-mir-1244-1/Downstream/15898936;
Nearest TSS
ENST00000437798/Upstream/2239; ENST00000469774/Downstream/11354;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2425, chr2-CpG: 70/Downstream/129584
Upstream sequence
TGTCCCTTTCCCACTTGTCTGCCTTCTCAACAGCGTATCCCTTCTTTCAGCTTTGACTCTCATCTTTGTGTAGGTAATACTTCACCTCTTAATCCAAAGC
Downstream sequence
TCTGTTCTTAAATTTGTCGCCACATATTCAATGACTTCAAATTTTAAGTCTGTACCCTGATATTCATTCTTTTCTCCAATTCAACCTATTTTGCGTACTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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