Basic Information
VIS ID
TVIS30004801
Fusion event
HIV-ACSL3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
223794630/222929912 (Hg38)
End
223794630/222929912 (Hg38)
Orient
+
Location type
Intronic
Target gene
ACSL3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-340-5p ; hsa-mir-375 ; hsa-mir-221-3p ; hsa-mir-100-5p ; hsa-mir-377-5p ; hsa-mir-6086 ; hsa-mir-655-5p ; hsa-mir-96-3p ; hsa-mir-329-5p ; hsa-mir-551b-5p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-26a-1-3p
Nearest miRNA
hsa-mir-10b/Upstream/3023347; hsa-mir-1244-1/Downstream/2080549;
Nearest TSS
ENST00000437798/Upstream/5358; ENST00000474422/Downstream/699;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/68207, chr2-CpG: 33/Downstream/122946
Upstream sequence
GGATGTCTTTTAGCTATCTTTAGCAGAATTAGTGGGAATATTTAATAAATTTAGGCTTGGAGTCATTTTGAAATTATCTATAAGAATAAATCTTAATATG
Downstream sequence
TAGTAACTCACtttttttttttttttttttttgacacggagttttgctcttgttgcccaggctggagtgcagtgtcaatggtttcggctcactgcaacct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate