Basic Information
VIS ID
TVIS30004802
Fusion event
HIV-SP140 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
231141359/230276644 (Hg38)
End
231141359/230276644 (Hg38)
Orient
+
Location type
Intronic
Target gene
SP140
Nearest miRNA
hsa-mir-10b/Upstream/2804457; hsa-mir-1244-1/Downstream/1086064;
Nearest TSS
ENST00000437798/Upstream/6746; ENST00000486750/Downstream/17645;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/207810, chr2-CpG: 125/Downstream/435950
Upstream sequence
acaaggtgattagcattatttccatgcctgctaacacaacgtccattctgcagcccatggatcaaaaagtaatttcaacttgcaagtcttaatatttaag
Downstream sequence
aaacacatgttgtaatgctatagctgtctctatacataatgattcttctgatgaatcttggcaaagtcaattggaaaccttctggaaaggattcaccatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate