Basic Information
VIS ID
TVIS30004805
Fusion event
HIV-chr2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
234156482/233247836 (Hg38)
End
234156482/233247836 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/697263; hsa-mir-149/Downstream/4263095;
Nearest TSS
ENST00000437798/Upstream/37785; ENST00000485623/Downstream/3735;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/43060, chr2-CpG: 72/Downstream/3618
Nearby gene
ATG16L1(No orient, 3735)
Upstream sequence
CTTCCCAGCAAAGCATGCTGAATCCTTTAGACAATCACTATTTACCAGAACAAATATAAAAACTCTCAAGATCTGTTATTTGTCACCAGAGTATTCAGAC
Downstream sequence
AACCTATTTCCTCCTCCTTCCTATTACTCATCCCCTGTATTACTCACCCTCCAGCCAGTCATTCCCCTCAGGGCCTGTGAACACACCTGAAGCCTCCCCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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