Basic Information
VIS ID
TVIS30004813
Fusion event
HIV-ELMO2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
45023272/46394633 (Hg38)
End
45023272/46394633 (Hg38)
Orient
-
Location type
Intronic
Target gene
ELMO2
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-429 ; hsa-mir-200a-3p ; hsa-mir-200c-3p ; hsa-mir-141-3p ; hsa-mir-200b-3p ; hsa-mir-17-5p ; hsa-mir-193a-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/689453; hsa-mir-1-1/Downstream/772334;
Nearest TSS
ENST00000382410/Upstream/151; ENST00000606362/Downstream/11926;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/30169, chr20-CpG: 68/Downstream/11451
Upstream sequence
TGGGGAGAAAGAATCAGAAAGGTGGAAAAAGAGTATTTCTTCATTTTTCACTCTTGTTACATGTTTTGAAGAGTTTGAAGACAGACACTGCATAAAGTAA
Downstream sequence
CACATGAAACTACCTGGTTTGAATTTTTCTAGATCATACCACAACTTCTGCTTAGGATTTTGTCTCTTGAGATTAAATCAGCAAGAAGAAATGGGACAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate