Basic Information
VIS ID
TVIS30004825
Fusion event
HIV-CABIN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24409997/24013546 (Hg38)
End
24409997/24013546 (Hg38)
Orient
+
Location type
Intronic
Target gene
CABIN1
miRNAs that regulate target gene
hsa-mir-1226-3p ; hsa-mir-151a-3p ; hsa-mir-320a ; hsa-mir-25-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p
Nearest miRNA
hsa-mir-1286/Upstream/1127167; hsa-let-7a-3/Downstream/1442100;
Nearest TSS
ENST00000624155/Upstream/2128; ENST00000474981/Downstream/41522;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/1936, chr22-CpG: 70/Downstream/142468
Nearest cancer related gene
CABIN1(OG, No orient, 0)
Upstream sequence
tcggcctccaaaagtgctgggattataggcgtgagccaccatgcccggccTctttttaagctttttaaactaattttagatttagagaaaaattgcaaca
Downstream sequence
atacaaaacgctctgttatgtccttcaccctgctttccctaatgttaacatcttacataatcatacaattatcaagaacagaaatctagtgttggtacag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate