Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene24155260242708982444235624270817244177402428660224290799242701932427272824291884242931612428431324285562242588022425999924264201242650002427480124275400242738012427400024298808
Basic Information
VIS ID
TVIS30004826
Fusion event
HIV-SPECC1L-ADORA2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
24694776/24298808 (Hg38)
End
24694776/24298808 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
SPECC1L-ADORA2A
Nearest miRNA
hsa-mir-1286/Upstream/1412429; hsa-let-7a-3/Downstream/1156838;
Nearest TSS
ENST00000624155/Upstream/27910; ENST00000440893/Downstream/5588;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/27301, chr22-CpG: 131/Downstream/124761
Upstream sequence
aggtgggaggggctccctcttacttagcctttttgttttattcaggtctacagttgatgagatgaggcccacccacattagggaagttaatctgctttag
Downstream sequence
acagtccactgaataaaacgttaatttcatccagaaacaccctcacagaaacacgcagaataatatttgaccaaatgtctgggcaccccatgatgcagtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate