VISDB Viral Integration Site DataBase

VIS ID

TVIS30004835

Fusion event

HIV-TRIOBP integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.1

Reference genome

Start

End

38159359/37763352 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-147a ; hsa-mir-6867-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-6715a-3p ; hsa-mir-497-3p ; hsa-mir-574-5p ; hsa-mir-6741-5p ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-6748-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-92a-2-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-4633-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-532-5p ; hsa-mir-512-3p ; hsa-mir-6813-3p ; hsa-mir-3200-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-93-5p ; hsa-mir-3194-5p ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-219b-3p ; hsa-mir-6823-5p ; hsa-mir-4691-3p ; hsa-mir-4733-3p ; hsa-mir-296-3p ; hsa-mir-5582-5p ; hsa-mir-6753-5p ; hsa-mir-302f ; hsa-mir-670-3p ; hsa-mir-3912-5p ; hsa-mir-4312

Nearest miRNA

hsa-mir-1286/Upstream/1476445; hsa-let-7a-3/Downstream/80920;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/16360, chr22-CpG: 32/Downstream/38947

Upstream sequence

tgaggcctgctttacggatgccaagactgaagctcagagggggcgaggggtttgttcaggttcactccaaggcgcagccagggtgaagaccgcctctgag

Downstream sequence

gtccaaagtcatgttctGTTGTCCTAAGCCAGGAGACACATAGAGGGCAGGAACAGAAGCCAGGGGACAGACACCCCTGTCGCCACATGAAGCTCTTGGC