VISDB Viral Integration Site DataBase

VIS ID

TVIS30004836

Fusion event

HIV-POLR2F integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr22

Cytoband

q13.1

Reference genome

Start

End

38350796/37954789 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1296-5p ; hsa-mir-378a-5p ; hsa-mir-320a ; hsa-mir-4266 ; hsa-mir-4777-3p ; hsa-mir-3164 ; hsa-mir-6820-3p ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-505-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-3663-5p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-4302 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-1207-5p ; hsa-mir-1237-5p ; hsa-mir-1909-3p ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-3144-5p ; hsa-mir-3191-3p ; hsa-mir-34b-5p ; hsa-mir-3665 ; hsa-mir-4488 ; hsa-mir-449c-5p ; hsa-mir-4652-5p ; hsa-mir-4697-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-486-3p ; hsa-mir-6511a-5p ; hsa-mir-6721-5p ; hsa-mir-6722-3p ; hsa-mir-6806-5p ; hsa-mir-6808-5p ; hsa-mir-6810-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1286/Upstream/107015; hsa-let-7a-3/Downstream/12774;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/827, chr22-CpG: 83/Downstream/28297

Upstream sequence

atattactattttaaagatagagcccaaaaattacctgtgggatatgtgggtgcaaagagagctagtctgaagataaAAATAAGAAACGTGTGGGATTGC

Downstream sequence

TACCCCATTCCCagtgagtgtcagtagagaagaggagatgacccgtggctgagcattagggcatttggacattgagtgcttgggggaaaagagaagccgg