Basic Information
VIS ID
TVIS30004837
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
39512990/39116985 (Hg38)
End
39512990/39116985 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-mir-1286/Upstream/1128132; hsa-let-7a-3/Downstream/1696898;
Nearest TSS
ENST00000624155/Upstream/16706; ENST00000624656/Downstream/16105;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/189462, chr22-CpG: 107/Downstream/28032
Nearby gene
APOBEC3H(No orient, 12918)
Upstream sequence
gccatgcttactcatatttggctcagaataaatctattcaaatattttatagagtttgactcttttcgttgacagatagacagacagataCTGGCATAGG
Downstream sequence
AATAGACAGGCAAATCTAAGACTTTTAAtctctctctttttttttttttttttttgagatagcatctcactctgtcacccaggctagagtgcagtggcgc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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