Basic Information
VIS ID
TVIS30004848
Fusion event
HIV-chr22 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50225218/49831570 (Hg38)
End
50225218/49831570 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-3/Upstream/288104; hsa-mir-12114/Downstream/131296;
Nearest TSS
ENST00000624155/Upstream/4058; ENST00000624617/Downstream/6216;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/3549, chr22-CpG: 198/Downstream/16517
Nearby gene
BRD1(No orient, 4022)
Upstream sequence
GAGTGGGACAATTATTTGGTAAATATCTTGGTCATAAGGCGTTACCCAGTGAAAGTGGACATGTTTATcagttacctcttgctgcaaaacaaaccacccc
Downstream sequence
caaaactttgtagctcaaaacagcagtcattccttttgttcacacatctgctatttgggcaggattcagcaggtacaactagactacttcctgcatcctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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