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TVIS30004864
Basic Information
VIS ID
TVIS30004864
Fusion event
HIV-PRKAR2A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
GRCh37/hg19
Start
48789433/48752000 (Hg38)
End
48789433/48752000 (Hg38)
Orient
+
Location type
Intronic
Target gene
PRKAR2A
miRNAs that regulate target gene
hsa-mir-197-3p
;
hsa-mir-155-5p
;
hsa-mir-103a-3p
;
hsa-mir-16-5p
;
hsa-let-7b-5p
;
hsa-mir-769-3p
;
hsa-mir-1260b
;
hsa-mir-4524b-5p
;
hsa-mir-4524a-5p
;
hsa-mir-646
;
hsa-mir-503-5p
;
hsa-mir-451b
;
hsa-mir-6859-5p
;
hsa-mir-3916
;
hsa-mir-3125
;
hsa-mir-6758-5p
;
hsa-mir-6856-5p
;
hsa-mir-6838-5p
;
hsa-mir-15a-5p
;
hsa-mir-424-5p
;
hsa-mir-195-5p
;
hsa-mir-15b-5p
;
hsa-mir-497-5p
;
hsa-mir-548e-5p
;
hsa-mir-887-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-1273h-5p
;
hsa-mir-30b-3p
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-30c-1-3p
;
hsa-mir-6864-3p
;
hsa-mir-3672
;
hsa-mir-4425
;
hsa-mir-92a-1-5p
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-655-5p
;
hsa-mir-769-5p
;
hsa-mir-4786-5p
;
hsa-mir-7162-3p
;
hsa-mir-544b
;
hsa-mir-4772-3p
;
hsa-mir-1304-3p
;
hsa-mir-4726-3p
;
hsa-mir-6764-5p
;
hsa-mir-1915-3p
;
hsa-mir-6840-3p
;
hsa-mir-6777-3p
;
hsa-mir-6890-3p
;
hsa-mir-4674
;
hsa-mir-6783-3p
;
hsa-mir-1343-3p
;
hsa-mir-6749-3p
;
hsa-mir-4437
;
hsa-mir-6815-3p
;
hsa-mir-378g
;
hsa-mir-532-3p
;
hsa-mir-6742-3p
;
hsa-mir-6852-5p
;
hsa-mir-939-3p
;
hsa-mir-1267
;
hsa-mir-129-1-3p
;
hsa-mir-129-2-3p
;
hsa-mir-17-3p
;
hsa-mir-2276-5p
;
hsa-mir-2392
;
hsa-mir-3173-5p
;
hsa-mir-363-5p
;
hsa-mir-3651
;
hsa-mir-367-5p
;
hsa-mir-4287
;
hsa-mir-4302
;
hsa-mir-4423-5p
;
hsa-mir-4469
;
hsa-mir-4496
;
hsa-mir-4532
;
hsa-mir-4651
;
hsa-mir-4666a-3p
;
hsa-mir-4685-3p
;
hsa-mir-4687-5p
;
hsa-mir-4747-5p
;
hsa-mir-5087
;
hsa-mir-5196-5p
;
hsa-mir-608
;
hsa-mir-642a-5p
;
hsa-mir-6499-3p
;
hsa-mir-6501-5p
;
hsa-mir-6505-5p
;
hsa-mir-651-3p
;
hsa-mir-6745
;
hsa-mir-6760-3p
;
hsa-mir-6773-3p
;
hsa-mir-6779-3p
;
hsa-mir-6799-3p
;
hsa-mir-6867-3p
;
hsa-mir-6871-5p
;
hsa-mir-6879-3p
;
hsa-mir-6892-3p
;
hsa-mir-7113-3p
;
hsa-mir-744-3p
;
hsa-mir-8069
Nearest miRNA
hsa-mir-12127/Upstream/107720; hsa-let-7g/Downstream/268148;
Nearest TSS
ENST00000440867/Upstream/11647;
ENST00000435419/Downstream/318;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/34529
,
chr3-CpG: 104/Downstream/95070
Upstream sequence
GTCCAGCAGCTCCTGTTCTCCCCATTCTCCCACAGCCCTGGACATCAGTTCTTTTCATACGGCTAAAGAACCTGCATGCCTGTCTTGCTCACAGGCTGTC
Downstream sequence
ATCAGTACTCAGAAATGTTTGCTGAAAGCATCCATTCATCCATCTCTGGTTGGTCACATAAACTGCCTAGGCCTAGACAGCAGTAAAAGATGGCAGAATA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Bcl-2 transduced CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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