Basic Information
VIS ID
TVIS30004875
Fusion event
HIV-PLD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
171407639/171689849 (Hg38)
End
171407639/171689849 (Hg38)
Orient
-
Location type
Intronic
Target gene
PLD1
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-638 ; hsa-mir-182-5p
Nearest miRNA
hsa-let-7g/Upstream/583090; hsa-mir-1224/Downstream/3679691;
Nearest TSS
ENST00000440867/Upstream/11996; ENST00000619900/Downstream/19021;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/228674, chr3-CpG: 84/Downstream/119978
Nearest cancer related gene
PLD1(TSG, No orient, 0)
Upstream sequence
cttcagcttcccaaagcgctgggactacatgcatgagccaccatacctggccTTACTGTTTTCTTAATAACACAttttttaaaaattgtagtaaagtaag
Downstream sequence
cataacataaaatttaccatcttaaccatttttaagtgtacaattcagtggtatcaggGTaatgagttagagagtcttctcttctcctcaatttttgaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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