Basic Information
VIS ID
TVIS30004876
Fusion event
HIV-ST6GAL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q27.3
Reference genome
GRCh37/hg19
Start
186765149/187047361 (Hg38)
End
186765149/187047361 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3C
Target gene
ST6GAL1
miRNAs that regulate target gene
hsa-mir-492 ; hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-18a-3p ; hsa-mir-218-5p ; hsa-mir-8081 ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-526b-5p ; hsa-mir-924 ; hsa-mir-5009-3p
Nearest miRNA
hsa-let-7g/Upstream/260584; hsa-mir-28/Downstream/1641420;
Nearest TSS
ENST00000440867/Upstream/3618; ENST00000470633/Downstream/24613;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/116047, chr3-CpG: 63/Downstream/91778
Upstream sequence
TTTTTTAACTCTGATCTATAGTATGTCTGTTTTCTTCAACCGGACTCAGAATGTAATTTTCCATAAATGGTTGTAGGATGTATTAGGCTAACTTGAAAAT
Downstream sequence
ATAAAAGCGTTTGGTGATAAATTGTGATAAAATTTCTTTCATAATAATTTCTAGCTATTTAGAGTTAACTACACCTAGAGGCAGTGGATTTTGATGTATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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