Fusion event
HIV-NFKB1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
103428391/102507234 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12113/Upstream/1176820; hsa-mir-1243/Downstream/6981464;
Nearest cancer related gene
Upstream sequence
TGCACTGTAAAGCCGTCATTGTTGAAAAGTACTCCGAAGATTAATAGCGGCAGTGTTTGTTAAAATAATAAAATAATCCAGGCACTCTGCCTGTGACTTC
Downstream sequence
CCCATGAGATGGCTTCCAGAAAAAGATAAATTTTTGTGTGTTCCCTTACGAGTTCAGTCTGCAGCTTCTGGGCATGAAGAGAAGCATAAACAAAACAAAC
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.