Basic Information
VIS ID
TVIS30004897
Fusion event
HIV-LOC105379013 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
67742273/68446446 (Hg38)
End
67742273/68446446 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105379013
Nearest miRNA
hsa-mir-10397/Upstream/8742743; hsa-mir-103a-1/Downstream/3723021;
Nearest TSS
ENST00000502646/Upstream/11965; ENST00000515504/Downstream/77432;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/157823, chr5-CpG: 62/Downstream/647404
Nearby gene
PIK3R1(No orient, 144624)
Upstream sequence
atttctggatcttatccctggagatctatctggtaggtttggaatggggctgcagcccaggatcttaatcaaacagcccaggtgatTTTATGTGGGGAAT
Downstream sequence
CTAGGTTCATATTTGAAAAATACCACAGTAATTGTGAAATAATTAAAATAATGAATGAATGGTAGCATTATGAATGTCAATAGTtgtttcccaaatttgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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