Basic Information
VIS ID
TVIS30004898
Fusion event
HIV-TENT2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
78937378/79641555 (Hg38)
End
78937378/79641555 (Hg38)
Orient
-
Location type
Intronic
Target gene
TENT2
miRNAs that regulate target gene
hsa-mir-374b-5p ; hsa-mir-590-3p ; hsa-mir-375 ; hsa-mir-130b-3p ; hsa-mir-148a-3p ; hsa-mir-19b-3p ; hsa-mir-615-3p ; hsa-let-7e-5p ; hsa-mir-19a-3p ; hsa-mir-130a-3p ; hsa-mir-152-3p ; hsa-mir-301a-3p ; hsa-mir-148b-3p ; hsa-mir-1468-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aj-5p ; hsa-mir-4698 ; hsa-mir-548aw ; hsa-mir-139-5p ; hsa-mir-7106-3p ; hsa-mir-2116-3p ; hsa-mir-885-5p
Nearest miRNA
hsa-mir-10397/Upstream/6762892; hsa-mir-103a-1/Downstream/3198600;
Nearest TSS
ENST00000502646/Upstream/28937; ENST00000509227/Downstream/3091;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/28687, chr5-CpG: 34/Downstream/48046
Upstream sequence
GCTCTACCTCTGTTTTGAAATGTCATTAGTTTGGATATGTTACCAGGATGCAGCAAAGAAGAGTATGTGGCAATATTATCTTCTTGATGTATTTCCTTTC
Downstream sequence
CATTTGAATTCTCACTGATTCTATTTTTAATCTTTACTTTTTTTCTCTTTGAAAATGCTTATTAAGGGAAAATAGATTTCACTAAAATTTAAAATAAGAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate