Basic Information
VIS ID
TVIS30004903
Fusion event
HIV-LARS integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
145500906/146121343 (Hg38)
End
145500906/146121343 (Hg38)
Orient
-
Location type
Intronic
Target gene
LARS
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-92b-3p ; hsa-mir-331-3p ; hsa-mir-106b-5p ; hsa-mir-183-5p ; hsa-mir-92a-3p ; hsa-mir-5096 ; hsa-mir-218-5p ; hsa-mir-1303 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-5587-5p ; hsa-mir-378a-5p ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6801-5p ; hsa-mir-193b-5p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4716-5p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-4781-3p ; hsa-mir-483-5p
Nearest miRNA
hsa-mir-10397/Upstream/2441372; hsa-mir-103a-1/Downstream/2940970;
Nearest TSS
ENST00000502646/Upstream/16974; ENST00000508019/Downstream/8873;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/184552, chr5-CpG: 57/Downstream/81819
Upstream sequence
AGGCCTTTTCTGTTTGCTGGGTTTTCAAATGTGGCAAAAGTAAAAAAACATATCTAAGTCCTCTGCTTATCAAGACAAGGAGGGCAGTTTACAGACTCTC
Downstream sequence
CCAATTGCAGTCCCCTGGACTTTGCCAAATGCTGCCAATCTGAATGGATTCTTTGAGACTAAAAAAACAGAATGTCCttcctcaaggatctagatccaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate