VISDB Viral Integration Site DataBase

VIS ID

TVIS30004904

Fusion event

HIV-CSNK1A1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q32

Reference genome

Start

End

148875551/149495988 (Hg38)

Orient

+

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-21-5p ; hsa-mir-652-3p ; hsa-mir-324-3p ; hsa-mir-548e-5p ; hsa-mir-6835-3p ; hsa-mir-4671-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-5692a ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-520c-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520b ; hsa-mir-302e ; hsa-mir-520a-3p ; hsa-mir-153-3p ; hsa-mir-3187-3p ; hsa-mir-7159-5p ; hsa-mir-4529-5p ; hsa-mir-4709-5p ; hsa-mir-4272 ; hsa-mir-1244 ; hsa-mir-181d-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-4262 ; hsa-mir-181c-5p ; hsa-mir-505-3p ; hsa-mir-421 ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-3129-5p ; hsa-mir-3942-3p ; hsa-mir-205-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-3160-5p ; hsa-mir-942-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6845-3p ; hsa-mir-136-5p ; hsa-mir-3121-5p ; hsa-mir-376a-5p ; hsa-mir-4760-5p ; hsa-mir-8061

Nearest miRNA

hsa-mir-10397/Upstream/65255; hsa-mir-103a-1/Downstream/236837;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/137942, chr5-CpG: 93/Downstream/54698

Nearest cancer related gene

CSNK1A1(TSG, No orient, 0)

Upstream sequence

ATGGCTTGAAGTAGTCTATCAAAAAATTGGGGAGATTTTTATTTAATAGTGAGTCAGCAAGGCATTTTTTGTTGTTTAAAAAAAATCTCATTTCCTTACA

Downstream sequence

GAAACAGTTTTTAGTTTTTAATGAACTTGTAAACAAAAAAGCTCCCATTTCAAAATAAAAACAAAATCCCAGATCATATAGATGTTTACAGTGATTACAT