VISDB Viral Integration Site DataBase

VIS ID

TVIS30004908

Fusion event

HIV-CREBRF integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr5

Cytoband

q35.1

Reference genome

Start

End

172537960/173110957 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-421 ; hsa-mir-335-5p ; hsa-mir-93-5p ; hsa-mir-484 ; hsa-mir-186-5p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-98-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-520e ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-519b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-519a-3p ; hsa-mir-873-5p ; hsa-mir-374b-3p ; hsa-mir-1179 ; hsa-mir-1184 ; hsa-mir-302e ; hsa-mir-4310 ; hsa-mir-4256 ; hsa-mir-4524a-5p ; hsa-mir-4690-3p ; hsa-mir-5011-5p ; hsa-mir-5197-5p ; hsa-mir-4524b-5p ; hsa-mir-5685 ; hsa-mir-6838-5p ; hsa-mir-7150 ; hsa-mir-7157-5p ; hsa-mir-758-5p ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-6833-5p ; hsa-mir-5697 ; hsa-mir-369-3p ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-329-5p ; hsa-mir-639 ; hsa-mir-1297 ; hsa-mir-4465 ; hsa-mir-147a ; hsa-mir-503-5p ; hsa-mir-646 ; hsa-mir-8066 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-3190-3p ; hsa-let-7c-3p ; hsa-mir-340-5p ; hsa-mir-4755-3p ; hsa-mir-5006-5p ; hsa-mir-190a-3p ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-4799-5p ; hsa-mir-711 ; hsa-mir-124-3p ; hsa-mir-338-5p ; hsa-mir-506-3p ; hsa-mir-5582-5p ; hsa-mir-9-3p ; hsa-mir-100-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a ; hsa-mir-6083 ; hsa-mir-4750-3p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4752 ; hsa-mir-5687 ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-5186 ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-4773 ; hsa-mir-6882-5p ; hsa-mir-3685 ; hsa-mir-4701-5p ; hsa-mir-588 ; hsa-mir-155-3p ; hsa-mir-298 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-4535 ; hsa-mir-4776-5p ; hsa-mir-6772-3p ; hsa-mir-3686 ; hsa-mir-6868-3p ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-3182 ; hsa-mir-20b-3p ; hsa-mir-3137 ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-577 ; hsa-mir-223-5p ; hsa-mir-574-5p ; hsa-mir-526b-5p ; hsa-mir-6867-5p ; hsa-mir-136-3p ; hsa-mir-1277-5p ; hsa-mir-6740-3p ; hsa-mir-4778-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-449b-3p ; hsa-mir-3714 ; hsa-mir-3910 ; hsa-mir-3074-3p ; hsa-mir-1246 ; hsa-mir-5580-3p ; hsa-mir-3124-3p ; hsa-mir-3679-3p ; hsa-mir-4272 ; hsa-mir-6074

Nearest miRNA

hsa-mir-10397/Upstream/195799; hsa-mir-12118/Downstream/192773;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/53547, chr5-CpG: 38/Downstream/117880

Upstream sequence

GTAGAAGACGGTATTTTTGTTTTATGGAAAAAGTTTTTAAGAGGGGAGAGATGAATGGACTCTGGTGCATTATGTTGTATAACAATAAAAAATTTTTTCA

Downstream sequence

TAGCTTTATTTTTTGTTTGCttttttagtaagtcagagttattgagctataacttatagtaaaatgtataccttttaatgtatacttttatgagttttga