Basic Information
VIS ID
TVIS30004926
Fusion event
HIV-CNPY3-GNMT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
42916281/42948543 (Hg38)
End
42916281/42948543 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
CNPY3-GNMT
Nearest miRNA
hsa-mir-10398/Upstream/1214933; hsa-mir-10524/Downstream/485999;
Nearest TSS
ENST00000381078/Upstream/4803; ENST00000372808/Downstream/12215;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/18670, chr6-CpG: 57/Downstream/11937
Nearby gene
CNPY3(No orient, 9273)
Upstream sequence
TGTCCAGTTACAGCCACATTCCCAAGATGAAGTCTTTTTGCAAACATGTCACACATTTAGGAATGAAGAATTTAGTCTTTTCAGCCAATTCCAAATAATG
Downstream sequence
TGTCCCACATTTAAAATATCACCTGttcttcttttcttttcttttttctttttttgagatggagtctcactctgttgcccagggaagtgcagtggcgcga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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