Basic Information
VIS ID
TVIS30004938
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
131774212/131453072 (Hg38)
End
131774212/131453072 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/4968359; hsa-mir-1202/Downstream/339100;
Nearest TSS
ENST00000381078/Upstream/202642; ENST00000484820/Downstream/120072;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/317055, chr6-CpG: 42/Downstream/174875
Nearby gene
ARG1(No orient, 120132)
Nearest cancer related gene
ARG1(TSG, No orient, 120132)
Upstream sequence
agtaggattctggatgggaattaggtgctaccaaatatatacaACtcaggtaggtccttgttaagaaatttgcccttgttaaggaattttattctaaatg
Downstream sequence
caatggaaagccactgaagaattttaagcagtaatctaacatttagagctttaaaagAGGCTTACATGTCTGATAAGGCTAAcctccctttactttattt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate