Basic Information
VIS ID
TVIS30004941
Fusion event
HIV-ZDHHC14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
157889886/157468854 (Hg38)
End
157889886/157468854 (Hg38)
Orient
-
Location type
Intronic
Target gene
ZDHHC14
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-130b-3p ; hsa-mir-587 ; hsa-mir-5581-3p ; hsa-mir-3140-3p ; hsa-mir-6872-3p ; hsa-mir-302f ; hsa-mir-451a ; hsa-mir-6511b-5p ; hsa-mir-676-5p ; hsa-mir-6811-5p
Nearest miRNA
hsa-mir-10398/Upstream/689123; hsa-mir-1913/Downstream/60278;
Nearest TSS
ENST00000381078/Upstream/87721; ENST00000523468/Downstream/73731;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/86509, chr6-CpG: 29/Downstream/123926
Upstream sequence
GGAGTAatttattgaggacctactgtgtgccaagcacattcttactgttaattagtccagcatcctacaaagtagatattttgattctcatttaatgggt
Downstream sequence
gaaaaatttgacgctcagacgtggcgcaggatttaagatcatttaactggtgaatggcagagcttgcatctgagccctggACAAAGGCTATAAAACCCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate