Basic Information
VIS ID
TVIS30004942
Fusion event
HIV-chr6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
160056296/159635264 (Hg38)
End
160056296/159635264 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/870511; hsa-mir-1913/Downstream/6874090;
Nearest TSS
ENST00000381078/Upstream/46095; ENST00000494513/Downstream/53084;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/319323, chr6-CpG: 114/Downstream/57261
Nearby gene
SOD2(No orient, 43853)
Nearest cancer related gene
SOD2(TSG, No orient, 43853)
Upstream sequence
aatgatagaaagaagtccaaatgcatagtaattatagtaaacataaatatattttgactcactagttaaaagacagaaactcccagaGGTTTTTTATAGA
Downstream sequence
ATATCTAGGCTTTTTATTCAAAAACTGGGCATAAAAATTTGaaaataaggccaatttaatagtattaatttagtcaaatagaattaaggccaacaatact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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