Basic Information
VIS ID
TVIS30004949
Fusion event
HIV-DGKB integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
14747866/14708241 (Hg38)
End
14747866/14708241 (Hg38)
Orient
+
Location type
Intronic
Target gene
DGKB
miRNAs that regulate target gene
hsa-mir-3121-3p ; hsa-mir-495-3p ; hsa-mir-551b-5p ; hsa-mir-5688 ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-95-5p
Nearest miRNA
hsa-mir-339/Upstream/7641196; hsa-mir-10399/Downstream/3418979;
Nearest TSS
ENST00000635602/Upstream/439040; ENST00000412014/Downstream/10639;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/716653, chr7-CpG: 17/Downstream/1691256
Upstream sequence
acaaaaatcacaagcattcttatacaccaacaacagacagagagccaaatcatgagtgaactcccattcacaactgcttcaaagagaataaaatacctag
Downstream sequence
gaatccaccttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggatacaaacaaatggaagaacattcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate