Basic Information
VIS ID
TVIS30004950
Fusion event
HIV-JAZF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
28181730/28142111 (Hg38)
End
28181730/28142111 (Hg38)
Orient
+
Location type
Intronic
Target gene
JAZF1
miRNAs that regulate target gene
hsa-mir-31-5p ; hsa-mir-96-5p ; hsa-let-7e-5p ; hsa-let-7a-5p ; hsa-mir-8063 ; hsa-let-7c-3p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-379-3p ; hsa-mir-4666a-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-216b-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-377-3p ; hsa-mir-5583-5p ; hsa-mir-3129-3p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-200c-3p
Nearest miRNA
hsa-mir-1183/Upstream/972548; hsa-mir-10399/Downstream/1538623;
Nearest TSS
ENST00000635602/Upstream/70427; ENST00000436758/Downstream/38211;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/401129, chr7-CpG: 144/Downstream/37300
Upstream sequence
cattagaaacaatgaggcagttctacttctactcacatggaatgattttcaaggtatatgattaaatgaaataaAATTAATTTAAAAATATTAGGATTAC
Downstream sequence
CTTCTTAATGATGTTCAAGCATTTTTTCCCTCTTCTTTGTAAACAGGACATGAAAACAGAATTTCGTAAATGCTActgcccataaacatcatctggggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate