Basic Information
VIS ID
TVIS30004951
Fusion event
HIV-LOC105375218 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
30315023/30275407 (Hg38)
End
30315023/30275407 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105375218
Nearest miRNA
hsa-mir-1183/Upstream/594579; hsa-mir-10399/Downstream/14387;
Nearest TSS
ENST00000635602/Upstream/96393; ENST00000459998/Downstream/8900;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/139567, chr7-CpG: 207/Downstream/8894
Nearby gene
ZNRF2(No orient, 8900)
Upstream sequence
TGTATAAAAAACACATTCCTTGTAAAATCTGATTATTTCCTAATGTTCAGGTCTGTTTGTTTCGATGTGGAGGTTGTAGAAGTTTTTTGGCATTAGTATT
Downstream sequence
CTAAACAGTTTAGTATTTGTTCATGTGTACATTTTGCCTATGAGAACGATGTGAAAACGTATCTGCATCCAATCATTTGATCAGTCCTGCAAAAGCTTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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