Basic Information
VIS ID
TVIS30004952
Fusion event
HIV-NT5C3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
33069518/33029906 (Hg38)
End
33069518/33029906 (Hg38)
Orient
-
Location type
Intronic
Target gene
NT5C3A
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-122-5p ; hsa-mir-16-5p ; hsa-mir-320a ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-6504-3p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-144-3p
Nearest miRNA
hsa-mir-1183/Upstream/296829; hsa-mir-10399/Downstream/1910854;
Nearest TSS
ENST00000635602/Upstream/2873; ENST00000482941/Downstream/6077;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/71927, chr7-CpG: 80/Downstream/32420
Upstream sequence
tctccccgcttcagcctcccaaagtgctgggattacaggtgtaagccaccatgcccagccAATACTGGTTTACTTTAAATCACAATGGATGAAAGAGAAC
Downstream sequence
CAGTAGCTAAAGGCATTGGTGGCTCCTGTGCAACATACAACCATTCATTTTCATTGTGTATTCATAAGTAGTGAATACACAAATGGCACGGGAGTAAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate