Basic Information
VIS ID
TVIS30004954
Fusion event
HIV-CCM2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p13
Reference genome
GRCh37/hg19
Start
45088898/45049299 (Hg38)
End
45088898/45049299 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7D
Target gene
CCM2
Nearest miRNA
hsa-mir-1183/Upstream/167499; hsa-mir-10399/Downstream/11906486;
Nearest TSS
ENST00000635602/Upstream/11038; ENST00000480382/Downstream/15304;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/48641, chr7-CpG: 66/Downstream/39081
Upstream sequence
tcctgcctcggcttctcaaagtgatagattacaagtgtgagccaccatgtccggccTATTATTTATTTTTATCTAATTGAATATGTAATTTATGTACATG
Downstream sequence
GTTCAAAATTCAAATGATAACAGAGATTCTTGGTGAAAAGAAATCATGTGCACCCTCCGTGGGAGGAATTGCTGACACCAGcttcttgtgtctttacagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate