Basic Information
VIS ID
TVIS30004956
Fusion event
HIV-chr7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
50490964/50423266 (Hg38)
End
50490964/50423266 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/5541466; hsa-mir-10399/Downstream/6532519;
Nearest TSS
ENST00000635602/Upstream/23169; ENST00000454521/Downstream/26429;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/22564, chr7-CpG: 78/Downstream/26663
Nearby gene
IKZF1(No orient, 18166)
Nearest cancer related gene
IKZF1(TSG, No orient, 18166)
Upstream sequence
atttagggtgggccctcgatccaaagactggtgtccttataggaaaagggagtgacacagacagatacggagtctcaggggaagaaggtcatgtgaagac
Downstream sequence
agaggccaagactggaatggcgctgtggcaggcggaggagcactgggaaccaccaacaggagtgtggcctgtcgacagcctgaggttggacttctggcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate